OK, I will take you at your word and give you a response.
They do not get a pass. That is a faulty premise.
There has been much discussion about the role of the church and its institutional indifference. For example, here:
“THE VATICAN AND THE CHURCH: CONTROVERSY AND INDIVIDUAL ACTION
The Vatican has a more troubling history when it comes to the Holocaust. As with Italy in general, it was often left to the actions of lower level Church officials and individuals to ‘do the right thing.’ Whether the Pope himself did enough is still debated today.
Prior to the war the Vatican seemed to start out on the right foot. In 1938, Pope Pius XI spoke out against Germany’s racial dogma and the Italian government’s willingness to follow in Hitler’s footsteps. He was a forceful critic of Fascism and asserted one could not be both Catholic and Fascist. Pius XI died in 1939, six months before the beginning of WWII. Eugenio Pacelli, a close associate, succeeded him as Pius XII.
Pius XII’s record on the Holocaust is complex and quite controversial. Many historians strongly criticize him for not saying or doing as much as he could have about the persecution of the Jews. Appeals from diplomats and local church officials to do something, were often met with insistence upon the importance of the Vatican maintaining its official neutrality. He was often publicly silent in the face of Nazi atrocities, particularly prior to 1942. Though he occasionally spoke out against oppression in general, Pius XII never spoke out publicly and specifically against persecution and murder of Jews even though it is certain he knew quite well what the Nazis were up to. He also never spoke out against a German roundup of Jews in Rome in October 1943, which literally could have been seen from the Vatican’s windows.”
However, as soundedfury rightly pointed out, the complicity and complacency of the Catholic Church was one and the same with that of other religions and other institutions including governments at the time.
Further, it was not universal within the church.
This reference is excerpted below:
“Irene Sendler, the courageous Polish Catholic nurse who saved Jewish children from death at the hands of the Nazis, died at the age of 98 in a hospital in Warsaw.
Sendler became known as the angel of the Warsaw ghetto for having saved 2,500 Jewish children from certain death.
During that time she worked for the Warsaw department of social wellbeing which administered the community soup kitchens throughout the city. She worked tirelessly helping Jews and Catholics.
After the creation of the Warsaw ghetto, Sendler was able to take in the children of many families in order to keep them from being deported to the concentration camps. She transported the children in ambulances as if they were sick with typhus, she hid them in trash cans, tool boxes, supply chests or coffins and later in convents and Catholic homes.
She created an archive with the real identities of the children so that one day they could be reunited with their surviving family members.”
Or this reference:
“It is true that the Vatican sheltered about 470 Jews behind its walls following the German occupation, while another 4200 were protected in Roman monasteries and convents. After the war, the chief Rabbi in Rome as well as Italian Jewish communities heaped praise upon Pius XII for his support.
The most notable example of individual action by Church officials to save Jews occurred in Assisi. Shortly after the Germans began rounding up Italian Jews, Padre Ruffino Niccacci of the Damiano monastery was asked by his bishop to find homes and hiding places for more than 300 Jews just arrived from Trieste.
Padre Niccacci managed to have many of the refugees sheltered in buildings on the monastery grounds and dressed them as monks and nuns to hide their true identities during frequent Nazi searches. Others were placed in parishioners’ homes and blended into the community. Not a single refugee was captured while staying at Assisi. In 1979 Alexander Ramati along with Father Niccacci wrote “The Assisi Underground”, a book about this remarkable episode in the Italian resistance.”